Demuxlet using Illumina GSA?
Hey everyone,
I'm looking to use output from Illumina Global Screening Array (GSA) as input for the R demuxlet package to distinguish five donors. Has anyone ever done this? If so, any tips/tricks? I've not dealt with GSA output before, so I'm not even sure what the files contain.
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GSA is in array. I am not sure if demultiplexing applies here. For GSA arrays, you can use Genome studio for SNV and CNV calling.