Extract the mRNA sequences of all the orthologs of a eukaryotic gene
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Generate nucleotide multiple sequence alignment from protein alignment?
written by molly77 •
-
Perl/Python script for batch download mRNA sequences for multiple genes
written by Shicheng Guo
-
How to align the sanger sequenced fragments against human reference gene?
written by bioinforesearchquestions
-
Get one maximum UTR per gene
written by max •
-
Downloading genes annotations from UCSC Table Browser
written by khorms
-
Where to get human 3'-UTR multiple sequence alignment ?
written by jack
-
Inference orthology relationship
written by bounlu
-
Parsing Protein Trees to determine orthologs and paralogs
written by lchau91 •
-
Cutting Off The First Domain From All The Proteins In An Alignment
written by khorms
-
How To Select Homologous Regions Based On An Alignment
written by sanchezcavani
If I understand your question correctly - you have a reference gene (mRNA sequence) and you want to perform alignments of this gene across species that are closely related to generate a multiple sequence alignment?
If you have access to all the gene sequences for all the species then have you considered performing a reciprocal ortholog search? For example, as described in the Methods section of this paper.