How to retrieve gene sequences by giving gene names and species names ?
Hello everybody,
I would like to retrieve all 23S gene sequences from 893 species, which names are listed in a fasta file. I tried to use Entrez bash commands to get the sequences, but I didn't succeed because I can't find a way to filter by gene names. If there is a solution to do that in Bash or R, it would be great. I can try to use Python too, but I'm not very familiar with it...
Thank you very much !
Clo
PS : sorry for my english
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Gene listed as "uncharacterized" even if I found it through another search term
written by 100dustedclays •
-
How to get all microRNA target genes?
written by Katarina •
-
Bulk Retrieval of Gene Sequences using Protein IDs (NCBI)
written by venura
-
How to get all transcript and CDS from gene_id in biopython?
written by ishenweiyan •
-
retrieve Sequence by Gene name?
written by billneu •
-
How to download ncRNA
written by Fischer •
-
Retrieve gene names from gene symbols using Entrez?
written by randalljellis
-
Running Entrez Direct-like commands on local or on custom mirror
written by p6patel •
-
Help with NGS
written by Letícia Raposo •
-
How To Use Biopython To Parse Blast Output And Get Gene Symbol From Ncbi?
written by eke •
