Differential expression between two conditions in sc RNA seq
Hello,
I was wondering if there is a way for differential expression analysis between two conditions when you don't have replicates yet.
At the moment I am using the edgeR package but it gives me errors after a certain point.
Any good suggestion would be much appreciated.
Thanks, Stavroula
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You can try findmarkers from Seurat: https://satijalab.org/seurat/reference/findmarkers