How do I map genes to snps
So I'm pretty new to computational biology and this might be a super dumb question to ask haha
How do I find out all the snps on a list of genes with a 50kb window at the start and end of the gene? Thanks!
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Answer here should get you thinking of one way: Getting BasePairs/SNPs/Variants from Chromosome Positions
Replace step 1 with a BED file of the chromosomal coordinates of genes you are interested in (+ 50 kb added).
it's a little late but thank you so much! that really helped
Annotate with tools like SNPeff, VEP etc or intersect with dbSNP vcf.
How To Map A Snp To A Gene Around +/- 60Kb ?
@pierre OP wants to start with a list of genes rather than rs ID's.