Cytoscape Diffusion Algorithm
Hi,
Can anyone tell me what diffusion algorithm is used by the tool diffusion in Cytoscape? Also, I found a plugin genemania in Cytoscape, does it do the same thing? I wish to get heat scores for the proteins in my network by providing a subset of proteins from this network as the positive set to genemania.
Thank you
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Nazifa Ahmed •
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GeneMANIA does not perform diffusion. The diffusion tool calls a web service. Here is the code for the web service: https://github.com/idekerlab/heat-diffusion/blob/master/heat_diffusion_service.py
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