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How To Visualize Network Comparatively Via Cytoscape Or Other Tools

Hi everyone, I've tried to compare & visualise two networks using network merge option in cytoscape. I've used difference & union option to find common & different in nodes between the network of same diseases at two different stages. my problem is im not able to visualize the sub-network comparatively, obtained after merging two parental network. Is thr any way that i can distinguish between both the networks?(note: For both the networks data is imported from STRING) My second question is do i've to consider network as directional for network analysis or it is undirected.?

Plz suggest me If thr is any other tool or plugin, which i can use for the above. Any inputs are welcome.

Thanks & Regards Maddy

network cytoscape
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updated by Biostar Biostar • written by maddy • maddy

2 answers

Try using CompNet tool (Publication link : https://www.ncbi.nlm.nih.gov/pubmed/27112575). The tool can be downloaded from : https://web.rniapps.net/compnet/

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written by kuntal.bhusan • kuntal.bhusan

Hi guys,

Plz suggest me If thr is any other tool or plugin, which i can use for the above. Any inputs are welcome.

• 0 views • link
written by maddy • maddy

please don't add this as an answer to your question. Now it looks as if the question would have been answered. Edit the original post, then delete the answer above.

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written by Istvan Albert Istvan Albert

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