Extract the sequence
I have different list files each containing different sequence IDs, I want to extract gene sequences from a fasta according to different list files and generate different fasta files according to different lists. For example, list1: >gene1, >gene2, list2:>gene3, and gene4 extract the sequences to obtain list1.fasta and list2.fasta. Thank you for your help.
• 710 views
•
link
updated
by
Pierre Lindenbaum
•
written
by
zhichusun •
•
written
by
zhichusun •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Sequence file extraction
written by zhichusun •
-
sequence renaming
written by zhichusun •
-
Merge multiple sequence files into one file
written by zhichusun •
-
How to extract only the specific fasta sequences by matching the ID's to a different source files ?
written by pinn
-
How to extract FASTA file from header list ?
written by takoyaki
-
combine columns from multiple files
written by bk11 •
-
Making Zero based coordinate system in gff file
written by 1234anjalianjali1234 •
-
Obtain sequences that did not appear in your fasta file
written by sicat.paolo20 •
-
Replace tip names in a newick file
written by tlorin
-
Assemble Reads According To Blast Result
written by biolab
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
https://www.cyberciti.biz/faq/bash-for-loop/