Has anyone ever used any ligand-receptor inference method on VisiumHD data (particularly single cell segmented data)? I have been working with some data for several …

The advent of single-cell RNA sequencing (scRNA-seq) in 2009 marked a turning point in biological research. With rapid advancements in sequencing technologies, single-cell sequencing has …

Hi, has anyone tried using Ginkgo CLI for CNV analysis in single-cell WGS data? If so, can you please share the tutorial? Thanks!

Hi all, Has anyone used t2t assembly with transcriptome data? If yes, single cell RNAseq or bulk? Which aligner(s) did you use? Thank you!

Single-cell transcriptome alignment and read count estimation The droplet-based sequencing reads were aligned to the hybrid human genome hg38 and P. falciparum pd37 (PlasmoDB-46_Pfalciparum3D7_Genome.fasta) to …

Hi Members, I need to do an assignment in single cell RNA seq using the tools tagged above. I will appreciate if anyone can help …

Hello, Which tool would you suggest for pathway analysis of cell clusters in single-cell RNA-sequencing data? Has anyone used ReactomeGSA package or scTPA (http://sctpa.bio-data.cn/sctpa)? Thank …

I tried to use Signac to process plant single-cell ATAC data, but I encountered problems when adding gene annotation information to the Seurat object. Here …

hellow all, I want to check the differences between two physiologically distinct roots in a plant (do not have reference genome). I have done RNA …

Hello all I am doing plant transcriptome data analysis. Sequencing was done using ion PGM, I got 23 million single end reads and 24 million …