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Intronic gVCF

Hi everyone, I'm looking for a VCF file with all the SNP of the hg19 but only from the intronic portions of the DNA. Does somebody know where I can find it? Or a table with the corresponding rs to all the hg19 variants position

Thank you

vcf introne intronic hg19
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updated by iraun iraun • written by Giulia.cosenza • Giulia.cosenza

1 answer

Maybe the easiest solution is to create a bed file with the genomic coordinates of the introns, and use a tool such as bedtools intersect (you can find it here) to extract only those variants from the VCF falling into the intronic regions.

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written by iraun iraun

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