PCA with DESeq2 Data
I conducted an RNAseq analysis with DESeqq2 and have a VST-transformed data frame I saved. I would like to do a PCA analysis with certain samples. Would anybody know if this is feasible?
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Trivas •
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pthom010 •
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The DESeq2 vignette is pretty helpful with this. http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#principal-component-plot-of-the-samples. Their vsd is a vst transformed dds and so should translate really easily to your data.
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