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Convert Loci to Gene Names?

I have a series of Medicago truncatula loci (Medtr3g093830.1, Medtr4g100630.1) and I wanted to get their gene names (ex. PR2 or UBQ5). I've been looking around with no success. Would anybody know about a resource I can use to retrieve these names for the respective loci? I have coding experience in Linux and R if it would be feasible to code for a solution.

annotation rna-seq gene
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updated by Fatima Fatima • written by pthom010 • pthom010

1 answer

I'm not familiar with plant databases, but do you have their sequences? Have you tried blastx?

Have you tried to see which databases have the information that you're looking for?

http://planttfdb.gao-lab.org/tf.php?sp=Mtr&did=Medtr3g093830.1 https://phytozome-next.jgi.doe.gov/report/gene/Dcarota_v2_0/DCAR_006845

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written by Fatima Fatima

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