This is a test version of Biostars. For the public version, visit https://www.biostars.org.
which python graphics library for plotting protein sequence data

I'll have to code in PYTHON some visualization method for multiple protein sequences and subsequences. I would try to show the alignment of many fragment sequences to the original sequences showing the position of fragments and the amino acids. The amino acids are to be colored by some physico-chemical properties.Something similar but not exactly the pic. as this:

enter image description here

Can somebody recommend any graphics or other library in Python suitable for this kind of job? The output can be graphics file like png or interactive graphics or html, doesn't matter really for me.

Thanks in advance

python data sequence visualization protein
• 1,371 views • link
written by The The

Hm, you could probably try to play with bash colored printing, but beware the usefulness of a bash alignment visualization to cite this towardsdatascience blog post:

After the alignment is done, you can visually inspect it with one of many alignment viewers. Unfortunately, this is not a process easily done from the command line, so Biopython doesn’t try to give you that ability.

Maybe less -rS ??

• 0 views • link
written by Carambakaracho Carambakaracho

unfortunately I'm expecting my data format will be different from standard alignment formats and may not work with the common alignment viewers

• 0 views • link
written by The The

0 answers

No answers yet.

Log in to answer this question.

More posts like this