This is a test version of Biostars. For the public version, visit https://www.biostars.org.
translateMetagenome2AGORA

Hi

I would like to work with the Cobra Microbiome modelling toolbox, I still need to upgrade matlab to work with it but I am already going through the manual and I wondered whether someone has experience with using the translateMetagenome2AGORA function on output of DADA2 pipeline?

in the tutorial it says: translateMetagenome2AGORA translates the output of common sequencing pipelines (e.g., MetaPhlAn) to the names of the AGORA models

Does the table need to be in a specific format?

Any help is much appreciated :)

metabolic-potential dada2 cobra microbiome-modelling-toolbox microbiome

0 answers

No answers yet.

Log in to answer this question.