How do I find the most common mutations in a MAF dataset?
How do I find the most common mutations in a MAF dataset? Should I use pfamDomains from maftools?
library(maftools)
d <- merge_mafs(lapply(Sys.glob("mafs/Patient*.maf"), read.maf))
d.pfam = pfamDomains(maf=d, AACol="Protein_Change", top=15)
d.pfam$proteinSummary[,1:7, with=FALSE]
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melissachua90 •
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