gene mapping using hggu133plus2 platform
#mapping gene symbols to probe id's
# for GSE149507- SCLC
probes.gse149507<- row.names(gse149507.BCD)
symbols.gse149507<- unlist(mget(probes.gse149507,hgu133plus2SYMBOL,ifnotfound= NA))
I'm using the above mentioned code to map gene symbols but very few probe id's are mapped to gene symbols and for the majority it is showing NA as output
• 483 views
•
link
updated
by
Ram
•
written
by
aimanmushtaq15 •
•
written
by
aimanmushtaq15 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
microarray data analysis in R
written by bioinformbeginner •
-
illuminaHumanv2.db returning NA for all Illumina probe ID to gene symbol conversion
written by accibio •
-
Non matched HG-U219 microarray probe sets.
written by arronar
-
Convert miRNA names to Entrez Gene ID
written by akastrin •
-
What people do with the probes that doesn't have any GENE SYMBOL in annotation databases?
written by arronar
-
Map gene IDs to gene names
written by bisansamara •
-
bioconductor code for getting citrus gene symbol and entrez IDs
written by zizigolu
-
normilization with RMA, human versus citrus
written by zizigolu
-
Error while converting SYMBOLS to ENTREZID - Bioconductor
written by Bade •
-
Tutorial: Analysing Microarray Data In Bioconductor
written by Obi Griffith
