More posts like this
-
Need help using ExpansionHunter
written by brianhill_nc •I would like to use Expansion Hunter with the data from a 30X genome (Nebula genomics) to look for repeat expansions. I'm not sure what …
-
How to unzip a file with .bgz extention
written by taniamahmood38 •Hello everybody, I have a bgzipped file (.bgz extention). Now I want to unzip it. Kindly let me know the command on ubuntu linuxOS to …
-
FALCON_unzip with HGAP4 (smrtlink 9.0)
written by SPHello Community, I am currently working on diploid assembly and would like to use HGAP4 with FALCON_unzip. This [documentation link][1] suggests that is it possible …
-
Perform one basecommand fot multiple files and get output for each file in CWL
written by mariafirulevabio •Dear all, I have a Dockerfile image with gzip utilite: FROM alpine RUN apk update && apk add gzip ENTRYPOINT ["unzip"] Consider I have two …
-
invalid compressed data--crc error
written by microbez.uaf •Hello everyone i am trying to unzip a file with the command " gunzip file_name.gz " and getting this error. gzip: invalid compressed data--crc error …
-
How to convert a .gbff to the .gbk using batch method (to do it computationally for several bacteri…
written by natasha.sernovaDear all, https://www.biostars.org/p/180676/ From the post above I know how to reach .gbff-files of all bacteria. When I unzip any genomic.gbff.gz file, I get genomic.gbff …
-
Split RNA-seq reads
written by mkh •Hi all, I have 75bp RNA-seq reads. I would like to split it to 38*37 bp. Is somebody know how is the easiest way to …
-
Getting RNA-seq Data From ENA (or GEO/SRA)
written by jiwpark00If I want to get multiple RNA-seq FASTQ files from repositories (ENA or GEO, etc), what is the best way to go about this? So …
-
.bam files to fastq including the unmapped reads
written by galozs •Hello, I have tophat output (.bam) generated by tophat and I want to convert them back to fastq files. Since it was mapped using tophat, …
-
How to get data from Agilent chip using R
written by zero_hsyHello: I have downloaded the raw data named `GSE48568_RAW.zip`. When I unzip this, what I get is a lot of txt files such as `GSM1181242_US14702384_251328210241_S01_44k_CGH_0605.txt`. …