This is a test version of Biostars. For the public version, visit https://www.biostars.org.
eagle2 + minimac4 script for phasing and imputation

I am wondering anyone can share a bash script/demo script to show how eagle2 + minimac4 for phasing and imputation?

Thanks

eagle2 minimac4
• 1,401 views • link
updated by abedkurdi10 • abedkurdi10 • written by Shicheng Guo Shicheng Guo

1 answer

Dear Shicheng Guo,

you can use Beagle alone for genotypes phasing and imputation.

check their documentation here: http://faculty.washington.edu/browning/beagle/beagle_5.3_07Feb22.pdf

• 0 views • link
written by abedkurdi10 • abedkurdi10

Log in to answer this question.

More posts like this