can PennCNV be used with Illumina 850k array data?

I have Karyostudio and Genomestudio v2011 and 2.0. I'd like to attempt PennCNV.

Does anyone have experience with this?

snp chromosomal array microarray

• 670 views • link

written 4.5 years ago by Jng •

0 answers

No answers yet.

More posts like this

Convert Illumina Final Report.txt file into PLINK input files (.fam, .lgen, .ped etc)
written 2.0 years ago by Alexandros.Frydas •

Hello everyone, I want to do perform a series of GWAS using Sheep genomic data. I received an Illumina FinalReport.txt file created with GenomeStudio and …
install of genomestudio 2.0.5 in aws
written 2.6 years ago by bioguy24

Hello, Does anyone have experience/guidance for installing genomestudio on an aws ec2? I am not as familiar with windows and not sure what version to …
Is there an easily implementable analysis (R based) for copy number, ROH, mosaicism, and ploidy in …
written 5.0 years ago by Jng •

I already use karyostudio and genome studio but am curious if there are some R based packages can offer some better ways to visualize the …
FISH Probe bed file
written 5.1 years ago by Jng •

I'd like to make a bed file of the Vysis FISH probes used so I can view in UCSC GenomeBrowser. The company website (below) gives …
Automate Illumina GenomeStudio With Python Script
written 10.2 years ago by travis.m.couture •

Hey everyone. I am currently working on automating a SNP pipeline and need some help figuring out how to interface Python with GenomeStudio. I want …
Use Aroma Project to preprocess files for PennCNV
written 10.7 years ago by gaiusjaugustus

Hello, I have CEL files from Cytoscan HD (n=39) as well as Affy GenomeWide SNP Array 6.0 (two populations, n=60 & n=500). I'd like to …
CNV detection for plant genome
written 11.4 years ago by Guannan •

Hello Recently, I have been working on the comparison of plant genomes. And I want to identify SVs and CNVs in my samples. I have …
Is there a tool to transform GenomeStudio genotype format to VCF?
written 12.1 years ago by Leonor Palmeira

I have genotyping data coming from GenomeStudio (Illumina) software from a SNP-chip, and I would like to convert this data to VCF. Does anyone know …
Analyzing Microarray Data In Triplicates With Lumi/Limma (R)
written 12.9 years ago by jth

<p>I would like to find out differentially expressed genes in 4 different groups; however, each group has triplicates. So, what is the correct way to …
What Are The Recommended Tools For De Novo Cnv Analysis?
written 13.5 years ago by pathaka001 •

<p>Hi, Does anyone out there have experience with de novo CNV calling in familial trios. I've gotten PennCNV to work for this, but have questions …