calculate genome intron length
Hi !
I want to study the intron size distribution in the genome from a gtf file. do you have any idea how to do this graphically so I can look at the average intron size? if you have any idea how I can calculate it, I am interested.
Thanks
• 1,153 views
•
link
updated
by
German.M.Demidov
•
written
by
Nobody •
•
written
by
Nobody •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to deal with high LD in bacterial genomes for selection scans.
written by nitinra •
-
Percentage of exons, introns and intergenic regions
written by Re •
-
intersect between introns and the UTR/CDS bed files
written by Kai_Qi
-
Comparison of variant distribution between chromosomes
written by misterie
-
Subset of genes with at least 1 intron larger than 5000 kbp
written by shania90.lk •
-
Extracting read counts from bam file for CDF calculation
written by phdbiochemist •
-
Matrix plot of deleted positions vs reference genome
written by samuel.lipworth •
-
Chromosome Location (chrX:123456) to Genomic Feature (Exon/Intron/UTR)
written by utkarshkapoor87 •
-
Splice-aware insert size for RNA-seq
written by shuelga •
-
Calculating Intron relative distribution
written by florent.risacher •
I would go hardcore and write a python script, simply collecting -[end of exon N] + [start of exon N+1]