molecular_weight in SeqUtils
values that are getting by calculating molecular weight of protein using inbuilt function is not accurate need to correct the values of some amino acids it seems. GitHub link https://github.com/biopython/biopython/issues/3859#issue-1128460803
biopython
molecular_weight
sequtils
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Is the definition of the secondary_structure_fraction function wrong?
written by renjing679 •Personally I think amino acids E, M, A, and L are commonly found in helix and V, I, Y, F, W, L in sheet, but …
-
Tool: Proteome-pI 2.0 - Proteome Isoelectric Point Database
written by Lukasz Kozlowski •[http://www.isoelectricpointdb2.org][1] - Proteome Isoelectric Point Database 2.0 ---------- **Proteome-pI 2.0** is an updated version of an online database containing the information about predicted isoelectric points. …
-
Python script to calculate properties of amino acids
written by anasjamshedI want to make a python script that can get as input sequence of N amino acids, and the output is a matrix of Nx6 …
-
Simple question on amino acids
written by tomlaheyh •Just looking for some good references on amino acids with some totals to give me a idea of the big picture How many amino acids …
-
Need Bioinformatics Help - Analyzing Unknown Dna Sequence
written by jamie_cooper2341 •I've been given a sequence to write a report as if I was a bioinformatician working with a research group who have recently obtained this …
-
amino acid alteration position for SNPs using biomart
written by tarek.mohamedHi, Is there a way by which I can get the location of amino acids alteration for some snps library(biomaRt) ensembl<-useMart("ENSEMBL_MART_SNP") ensembl<-useDataset("hsapiens_snp",mart=ensembl) SNPs<-getBM(filters ("ensembl_gene"),attributes=c("refsnp_id","ensembl_peptide_allele","ensembl_peptide_allele"),values=("ENSG00000197506"),mart=ensembl) head(SNPs) …
-
News: Community Feedback - OBF mailing list issues
written by Chris FieldsThe Open Bioinformatics Foundation has hosted a number of mail lists for specific Bio* projects like Biopython, BioPerl, Biojava, Bioruby, and EMBOSS. Over the last …
-
molecular weight, protein
written by ashamscsoft •i have a doubt in conversion of molecular weight to molar concentration. my doubt is i did this in online and the link is molbiol.edu.ru …
-
Are There Numerical Values For Beta-Sheets, Alpha-Helixes, Other Structure Predictions.
written by shane.neeley •<p>I am looking for some sort of protein structure prediction method that will give me a value for a peptide's probability of being a beta-sheet. …
-
Calculate Mw In Kda From Protein Sequence
written by kajendiran56 •<p>thank you for taking the time to look at my post. I was wondering if there is anyone who could help me to calculate the …
Several established tools have results that agree well and your method is very off. What does that tell you for a very common problem such as AA protein mass? Most likely your method is suboptimal? How did you calculate it?