Hi, I am analyzing RNA-seq samples from 4 different cell lines. The goal is to identify differentially expressed genes (DEGs) between control and treated samples …
Hi, I am interested in performing Differential gene expression analysis of samples with no replicates (one control vs one treated). Is it possible to perform …
i want to identify differential alternative splicing between two conditions having three replicates each, for that i m using rMATS. I have already generated genome …
Hi, I read previous posts about multiple conditions testing. However, my case is a little bit different. I have 3 different groups (plus their controls) …
Hi, I have two conditions untreated and treated with two biological replicates each(RNASeq). But the samples are from different sequencing runs. The untreated library is …
Hi, I was wondering if I could get some advice on controlling for random effects using DESeq2. For example, given simulated data: ```r Treatment Batch …