Incorporate SNP/Indel and generate new sequence from original reference gene sequence
- I have SNPs and indel information in the form of SNPs/indel and their position.
- I have downloaded the sequence of gene from reference genome
- How to generate the new sequence with incorporated SNP/Indels in the gene sequence of reference?
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amar.kant20422 •
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Assuming that your SNPs/InDels are in VCF format and use the same coordinates as your genes, this thread could be of help.