Retrieve annotated genomes from Ensembl Genomes or GenBank

Greetings!

I am trying to retrieve annotated genomes, and would like to know how I can obtain this information programmatically, from either Ensembl Genomes or GenBank. Input can be either a list of tax IDs or a list of organism names.

genomics metagenomics annotation

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updated 4.5 years ago by GenoMax

• written 4.5 years ago by João Sequeira •

1 answer

See tools mentioned in this past thread: How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?

There is a taxID solution here: Retrieve reference genome for a taxonomic id from NCBI automaticaly

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written 4.5 years ago by GenoMax

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