This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How extract a specific part of sequence from a gtf file?

I want to extract a specific part of sequence from a gtf file not all sequences. I used gffread, it extract all sequences but I need only special part. please help me how can I do this.

Thanks

gtf

post few lines from gtf with sequences.

2 answers

Extracting genomic feature sequences from GTF/GFF files with AGAT

gffread from the Stringtie package also has this functionality.

Log in to answer this question.