Convert Bam to a single FASTA file
Hi!
How to covert a mapped BAM file to a single consensus FASTA file (similar to reference genome arranged by chromosomes)
Thanks!
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Santosh Anand
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Raman2 •
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Raman2 •
1 answer
What did you try on your own? Here are some of the suggestions by searching your keywords
Generating consensus sequence from bam file
https://chipster.csc.fi/manual/samtools-consensus.html
https://samtools.github.io/bcftools/howtos/consensus-sequence.html
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Santosh Anand
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