Hi all,
I experience an error when using SUP (super high accuracy) mode. HAC and FAST are running fine on my data (~2GB fast5 files). The error looks like a memory error:
[guppy/error] basecall_core::CUDACaller::thread_main: Exception in CUDACaller worker thread: Could not allocate CUDA shared buffer, size 6404734208 terminate called after throwing an instance of 'std::runtime_error'\ what(): Could not allocate CUDA shared buffer, size 6404734208
I am working with:
- Guppy 6.0.1+652ffd179
- Ubuntu 18.04.
- Nvidia GTX1070
- Driver Version: 510.39.01
- CUDA Version: 11.6
Did anyone experience a similar issue. I cannot find anything in the www.
Best, Alex
1 answer
Just to close this question:
I found that doing demultiplexing and basecalling at the same time using guppy_basecaller will take much more GPU memory. If you experience the same problem, you can do on after an other.
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Maybe a couple fo solutions can be found here