More posts like this
-
Generating a 3D model from 2D slices of a nucleus
written by jachimowicz9002 1Hello, I've been thinking about generating a pipeline to piece together a 3D model from a large group of 2D images. These images include 1 …
-
How to make a UMAP for single cell data and color cells by average expression of a list of genes in…
written by bioinfo 19Hello, I have single cell and bulk RNA seq data for both of which I have performed some basic analysis. For the bulk RNA seq …
-
ValueError: Image size of 124950x11600 pixels is too large. It must be less than 2^16 in each direc…
written by Neel 2Hi, i am using rgi model of CARD database to draw a heatmap of presence and absence of gene and it giving following error. Traceback …
-
How do I put the color scales on heatmap.2?
written by Bioinf_Questions 0Hello. I'm making a heatmap of my data using heatmap.2, but once the plot is done there is no color scale. Shouldn't it be done …
-
how do I add a title to an Upset plots
written by peter.berry5 6I was trying to add a title to an upset plot using the suggestion in this [post][1] but it returned an error. Error in upset(plot, …
-
Visualize DNA sequence as a dot plot?
written by jaydu 0Hi! Is there a very, very simple tool to visualize DNA in a dot plot or something like that? I am basically looking to get …
-
Properly displaying read length distribution of different datasets together
written by mz1101 0Hi, What would be a proper way of plotting read length distributions from different datasets (e.g. raw reads vs. reads after quality filtering, with one …
-
RAY assembler. running time/memory usage
written by Nastasiia 1We have 2x7.7 Gb paired end ~100bp reads. With kmer=45 option RAY assembled it for ~2h10m on 16 core 32 Gb node. Suspecting it's too …
-
Tool: Determination of rolling ball radius in Image J for western quantification
written by toyan.j.p 3How to determine the rolling ball radius for background subtraction in Image J? The default is set to 50 pixels. They say in documentation "it …
-
Best Aligner for Short-Read (50 bp) Alignment of Non-human Sequences from Human Samples
written by melonpwn 1Hello all, I am currently involved in a project where I have human blood and plasma samples, and I wish to examine the nonhuman DNA …