R script or package for nested bubble plot
Looking for R script or package that can make a nested bubble plot like this.
bubble-plot
r
• 1,829 views
•
link
updated
by
Ram
•
written
by
Confused_human •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How can I create a sample characteristic/mutation plot in R?
written by db4761 •I am wondering if anyone can help me figure out how to create a plot like this in R to show the characteristics of my …
-
Freyja tool help
written by Confused_human •Hello everyone, I am using [Freyja tool][1] for plotting my data. I am using this command: freyja plot [aggregated-filename-tsv] --output [plot-filename(.pdf,.png,etc.)] which generate this plot …
-
Is it possible to add significant stars besides oncoprint ?
written by Lillian •I have create oncoPrint by `Complexheatmap` package in R like this: ![enter image description here][1] I'm wondering is it possible to make annotation of significant …
-
Make a line chart flatter
written by 3095916029 •I used R package "ggplot2" to draw a line chart. Now i want to make it flatter. Is there any data processing or graphical processing …
-
Extracting list of mutations from .tsv file and arrange them in protein specific with binary 0 (Abs…
written by k.kathirvel93Dear All, I have .tsv file like this with genome name (1st coloumn) and aminoacid mutations for different proteins... ![enter image description here][1] I want …
-
How to increase space in Y axis label
written by Confused_human •Hello, Everyone I have run this R script to get a bubble chart library(reader) data <- read.csv("C:\\Users\\user\\Documents\\class.csv", header=TRUE, stringsAsFact=FALSE sizeRange <- c(0,20) library(ggplot2) ggplot(data, aes(x=0,y=Class)) …
-
how can I draw a connecting line between the label and the plot in R
written by Confused_human •Hello everyone, This is my script for the plot, > library(reader) > data <- read.csv("C:\\Users\\user\\Documents\\kingdom.csv", header=TRUE, stringsAsFact=FALSE) > dfdata = data.frame(data) > dfdata Kingdom Total …
-
Bubble plot in R
written by Confused_human •Hi, all I have used this script to get this bubble plot library(reader) data <- read.csv r <- c(1,194,26302,81,69, 12,11617,55,10) dfdata = data.frame(data,r) dfdata sizeRange …
-
R script for bubble chart
written by Confused_human •Hello all, I have data like this : ``` Phylum Total Proteobacteria 148120 Firmicutes 76612 Actinobacteria 26312 Bacteroidetes 11127 Cyanobacteria 2929 ``` I want to …
-
DESeq2 R markdown plotting problem
written by Pahi •Hello! I'm working on my DESeq2 data analysis and I want to make a report with R Markdown. But I have a problem when I …
it helps to post the reference for such images.
I have got this image from this given research paper, BUT sadly in the method section they have not mentioned any R package or tool or anything as such . I am just wondering how can I recreate such kind of plot for my data.
https://www.frontiersin.org/articles/10.3389/fmicb.2016.00316/full
Please refer to this post: Nested Bubble Plots. Same question was asked 3.2 yr ago with same image. But no easy answer. If you can consider alternative diagram, I would suggest sankey diagram which have similar flow.