Find most mutated genes in TCGA and perform RNA SEQ
I have a data set that uses TCGA data and I want to find the 10 most mutated genes by counting how many times each gene is mutated (Mutated==1) and then I want to find which genes are more expressed using RNA seq data. Can i have some guidance please because I am new to this. Thank you.
1 answer
If you are not familiar with bioinformatics, I recommend using cBioportal for your analysis. You can lean how to use cBioportal according to the guidance on its website. It can meet all your requirements.
• 0 views
•
link
written
by
shiyang_bio •
Log in to answer this question.
More posts like this
-
filtering low expressed gene in microarray for WGCNA
written by Fluke •
-
Find conditions where target gene is most differentially expressed (CBioPortal/TCGA)
written by Dirk
-
TCGA- which files to download for analyzing differentially expressed miRNAs
written by ginny •
-
Transformed cancer cell-lines RNA-seq database
written by ever_wudi •
-
question about co-expression in TCGA
written by tujuchuanli
-
Differential Gene Expression between 2 RNA seq groups without normal control
written by bionerd •
-
Genome wide transcription binding site in a worm species
written by Mehmet
-
differentially expressed miRNA
written by lilly •
-
how can i select lncRNA from Agilent RNA expression data
written by enterid •
-
how to find sample type information from TCGA?
written by aichen •
