ANNOVAR
Perl annotate_variation.pl -buildver hg38 -downdb cytoBand humandb/
I'm unable to download the above database. Please help with solution!!!
hg38
datasets
annovar
• 1,316 views
•
link
updated
by
brunobsouzaa
•
written
by
1si17bt025 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
ANNOVAR Download Failing
written by tony •Wondering if anyone else is running into this issue. I am attempting to download some tables from ANNOVAR for variant annotation. However, every download command …
-
Annovar installation
written by Monisha •``` perl annotate_variation.pl -buildver hg19 -downdb -webfrom annovar ljb23_all humandb/ NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done NOTICE: Downloading …
-
Having trouble running ANNOVAR annotator for the first time please help!
written by screadore •Hey guys so I'm trying to run ANNOVAR for the first time on a Windows x64 Dell laptop. The following issues have occured: H:\>perl C:\Users\SCreadore\Desktop\annovar\table_annovar.pl …
-
Annovar: Mouse database download
written by v.chimankar •Hi there, I want to work with specific mouse strain from ucsc browser (A/J) on my annovar. How do I download it? perl annotate_variation.pl -buildver …
-
Error while trying ANNOVAR
written by Gene_MMP8I am trying to annotate a set of mice variants using annovar. I have used the command below: perl table_annovar.pl C131T137.avinput mousedb/ -buildver mm10 -out …
-
ANNOVAR download and processing frequently Questions
written by Shicheng GuoHow to solve the problem annovar cannot download esp6500siv2? annotate_variation.pl -downdb -webfrom annovar esp6500siv2 humandb -buildver hg19 & annotate_variation.pl -downdb esp6500siv2 humandb -buildver hg19 & …
-
Annovar for mouse buildver and downdb?
written by SharonHi All I am trying to use annovar for mosue data. I used this command to create the mouseDB: perl annotate_variation.pl -buildver mm10 -downdb -webfrom …
-
Download error 1000g2015aug for annovar
written by kamel •Hello all I want to install annovar software but their downloading the 1000g2015aug database I get the following error: ./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar …
-
Is it possible to add all possible VCF annotations in one command using ANNOVAR ?
written by kayHello So I know Annovar documentation talks about gene-based, region-based and filter-based annotations. I am interested in annotating my input VCF file with ALL these …
-
Annovar And Ubuntu 12.10 - Database Download
written by Achim •I have a problem downloading additional databases on two Ubuntu 12.10 machines. On all my other PCs it is working without a Problem. Here is …
What is the error? You need to provide more info on that!