More posts like this
-
Introduce SNPs on FASTA
written by Riccardo 1Hello everyone! Is there a way to introduce specific SNPs on the fasta sequence of a gene? I am working on a Pharmacogenetics project and …
-
Downloading specific gene sequences within a genome from genbank using biopython
written by Wilber0x 7Is there a way to download specific gene sequences from genbank using Seq.IO and the gene IDs? I know how to download a genome sequence …
-
How do I find simple variant data for an entire project (cancer type) in PCAWG?
written by tgutman100 0Hey, I want to download simple variant information (SNPS, small deletions and insertions) for all the patients of a specific cancer types. Is there any …
-
How to obtain a list of proteins involved in organism specific pathways?
written by Alec Watanabe 6Hello Biostars community, I know there are some posts about pathways, KEGG and other tools but I do not quite think it is the same …
-
p53 cancer patient RNA seq and protein sequence data
written by sxp358 1Hi! I am undergrad student new to bioinformatics and doing a self project trying to run some analysis comparing the data from cancer patients to …
-
Extract neighbourhoods of mutations
written by Gene_MMP8 25I want to download the neighborhood of mutations in a cancer genome. Say, I have a mutation at location 'x' in a cancer sample. Now …
-
How to download sequences of one gene from all individuals from 1000 genome (phase III)
written by martinsindelar0077 1Hi, I'm kind of new in this.... could you advice me if there is any tutorial or how can I do that to download sequences …
-
How to view the list of over or under expressed genes in any particular cancer?
written by ujwalda 0Hi, I am curious to know how we can see a list of highly or lowly expressed genes in any specific cancer relative to its …
-
Exon Sequences for SCN5A gene for a specific population
written by ammarsabir15 7I want to get exonic sequences for SCN5A gene for a specific population. From 1000genomes project you can get the whole exome sequence but can …
-
Is it possible to get seq data for cancers via database?
written by gooshiroy 2I am looking for resources to download actual sequence data in terms of nucleotide arrays for certain cancer mutations. Are there any databases available to …