This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Exon Sequences for SCN5A gene for a specific population

I want to get exonic sequences for SCN5A gene for a specific population.

From 1000genomes project you can get the whole exome sequence but can not screen out exons for a specific gene.

Is there any way to do this through Ensemble's biomart or if there is any other database to get these sequences based on population?

gene sequence ensembl

1 answer

There's nowhere to get the exon sequences, but you can get the whole CDS sequences for all the individuals in 1000 Genomes for each of the transcripts on the transcript haplotype page.

Log in to answer this question.