The best method and software for network analysis in transcriptome data
Hey there. Could anyone recommend a method and software for analysing networks in the metatranscriptome data? Thanks.
data
analysis
software
network
transcriptome
• 651 views
•
link
written
by
shabegmatov
0
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Genetic prioritisation method
written by Shalini 2Hi Can anyone recommend a tutorial/course on the genetic prioritisation method using GWAS, rare variants, and expression data that could be used for drug discovery? …
-
Paired-end sequnces of 16S rRNA are not merged.
written by shabegmatov 0Hey there, colleague. I am trying to merge paired-end sequences of 16S rRNA by FLASH software. But, I am getting only less than 3% of …
-
Can/should Bracken be used with metatranscriptome data?
written by kristenbeck527 1Does anyone have experience running Bracken with metatranscriptome data? It seems appealing to be able to recover some of the reads assigned at a higher …
-
Gene regulatory network visualization and annotation
written by morteza.mahmoudisaber 8Analyzing Microarray data, I obtained a group of deferentially expressed genes and now I want to identify the gene regulatory networks in which these genes …
-
specifications for a computer for analysing NGS metagenomics data
written by samakalyana.lvpei 0Can anyone recommend some specifications for a computer for analysing NGS metagenomics data (especially illumina MiSeq data of stool samples for analysis of bacterial (V3V4) …
-
metatranscriptomic read mapping
written by bsp017 5I mapped a depleted metatranscriptome bam file against a reference bacterial genome. Some genes have a 'substantial' number of reads mapping. I have previously isolated …
-
Forum: Granger Causality based causal networks
written by Woa 293Hello All, Can anyone point to some good tutorial , review , software etc. for a beginner to understand how to identify Causal gene networks …
-
How To Build Co-Expression Networks?
written by Alan R. Fachini 2Hey guys. I am starting in a new project (in a cooperation between biologists and computer scientists) where we want to build Gene Co-expression Networks …
-
Co-Expression Networks Of Rna-Seq
written by Diana 93<p>Hi everyone!</p> <p>I'm interested in making a co-expression network out of RNA-seq data that I have for 3 different samples (developmental stages) without replicates. Is …
-
Software / Pipeline For Affymetrix Genome-Wide Human Snp Array 6.0
written by pmoney1 8<p>Hi,</p> <p>I'm wondering if anyone can recommend any software / pipeline for analysing Affymetrix Genome-Wide Human SNP Array 6.0. Preferrably something that does an integrative …