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Gene regulatory network visualization and annotation

Analyzing Microarray data, I obtained a group of deferentially expressed genes and now I want to identify the gene regulatory networks in which these genes are over-represented, visualize these networks and annotate the networks.

As I searched, it seems that Cytoscape is the best software for this end, however, the tutorial for the software (version 3.4.0) did not addressed this issue so I was wondering if anyone could help me to figure this out.

cytoscape gene regulatory network visualization
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updated by Biostar Biostar • written by morteza.mahmoudisaber morteza.mahmoudisaber

1 answer

I am not sure exactly what you are trying to do, but it seems that Reactome may suit your needs. http://www.reactome.org/

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written by spacemorrissey spacemorrissey

@ spacemorrissey: Thank you. Reactome is exactly what I needed.

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written by morteza.mahmoudisaber morteza.mahmoudisaber

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