Creating SNP index
Hello, I'm having a problem in creating SNP index of Brassica allopolyploids using gmap. Where can I find the SNP data of Brassica? In order to create a pseudo genome I need to have the SNP index. I have tried the snpindex command of gmap with VCF files created using samtools and freebayes. But it showed errors. Please help!
Thanks in advance.
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thulani.m.hewavithana •
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