TCGAbiolinks methylation data normalization
hello!
I downloaded TCGA methylation data using TCGAbiolinks package in R.
<h6>#############code</h6>query<-GDCquery(project = "TCGA-READ", data.category = "DNA Methylation", legacy = F, platform = "Illumina Human Methylation 450", sample.type=c("Primary Tumor"))
GDCdownload(query)
data<-GDCprepare(query)
data<-SummarizedExperiment::assay(data)
<h6>#</h6>I want to use this data to train and test my machine learning model.
I think it has been already transformed to 0-1 scale value.
should I normalize again this data??
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