What is the best way to make mapping of RNA virus from transcriptomic data?
I am mapping an RNA virus using transcriptomic data. However, when I mapped the reads with BWA I got some reads in the final bam output, otherwise, when I mapped employing TopHat the bam output was empty. I would like to know, what is the best way to map RNA virus?
Thanks in advance for the answer.
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Lissa Cruz Saavedra •
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