An issue with application of SPAdes genome assembly in Galaxy · Biostar

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An issue with application of SPAdes genome assembly in Galaxy

Dear Colleagues,

I would like to let you know that I am a new user in the Galaxy Platform. I have tried several time to operate the SPAdes genome assembly. However, I have kept facing an error as you can see in the attached image which is the output of my using this program. Please any help to overcome this issue.

Adnan

galaxy spades

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updated 2.4 years ago by Ram

• written 4.7 years ago by adnan.lahuf •

Sorry the image is not uploaded correctly. Thus, please see below the out put error.

SPAdes on data 8 and data 7: contig stats Command line: /ocean/projects/mcb140028p/xcgalaxy/conda/envs/__spades@3.12.0/bin/spades.py -o /ocean/projects/mcb140028p/xcgalaxy/main/staging/39113298/working --disable-gzip-output --careful -t 24 -m 62 -k 117,121,127 --pe1-fr --pe1-1 fastq.gz:/ocean/pr An error occurred with this dataset Command line: /ocean/projects/mcb140028p/xcgalaxy/conda/envs/__spades@3.12.0/bin/spades.py -o /ocean/projects/mcb140028p/xcgalaxy/main/staging/39113298/working --disable-gzip-output --careful -t 24 -m 62 -k 117,121,127 --pe1-fr --pe1-1 fastq.gz:/ocean/pr

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written 4.7 years ago by adnan.lahuf •

Please ask Galaxy related questions on their help forum for immediate response. They can see your data and may have more insight to assist: https://help.galaxyproject.org/

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written 4.7 years ago by GenoMax

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