Biopython separate gap score functions for border/internal gaps
Hi,
I would like to define different gap score functions for left/right/internal gaps in Biopython.
After reading the documentation (http://biopython.org/DIST/docs/tutorial/Tutorial.html#sec101, section 6.6.2.5), I found out I can define a gap scoring function for a Bio.Align.PairwiseAligner object. However, it seems like only aligner.query_gap_score or aligner.target_gap_score attribute can be assigned a function. When I try to assign a function to aligner.query_left_gap_score, it fails.
Is there any way to specify different gap scoring functions for internal and end gaps?
Thank you.
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