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I have genomic file. But it has different representation than usual

Recently I got access genomic data by an organization. It has .bgen file, so I converted it to vcf file by qctool. But it has different SNP representation than I used to. I used to SNP representation like 0, 1, 2 or 00, 01, 10 and 11. But it has representation like 0,0,1 ; 1,0,0 ; 0,1,0 and .,.,. . Please kindly enlighten me about that.enter image description here

snp genotype vcf format bgen
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updated by 4galaxy77 4galaxy77 • written by asadrahmanms • asadrahmanms

Seems like you have genotype probabilities. You can use qctools to convert them into genotypes.

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written by 4galaxy77 4galaxy77

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