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Is there is any tools to calculate the Average Nucleotide Identity (ANI) among the Plasmodium genomes?

Hello Everyone,

Is there is any tools to calculate the Average Nucleotide Identity (ANI) among the Plasmodium genomes. Any suggestion will be deeply appreciated.

Thank you

sequence ani alignment calculator

1 answer

There is a quick one here which doesn't do full alignments (might be less accurate, but fast). Usage may be appropriate depending on how many genomes you want to compare.

https://github.com/ParBLiSS/FastANI

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