vcf file indiviual column interpretation
QUAL 2460.98
FILTER PASS
INFO ASP;CAF=0.9778,0.02216;COMMON=1;
FORMAT GT:AD:AF:DP:F1R2:F2R1:GQ:PL
sample1 0/0:2,0:.:2:.:.:6:0,6,57
sample2 0/0:30,0:.:30:.:.:90:0,90,1012
sample3 0/0:24,0:.:24:.:.:72:0,72,779
sample4 0/0:29,0:.:29:.:.:86:0,86,976
I would like to know what is the each sample explaining. The result belong to 1 rsid
2 answers
This explains it pretty well https://en.wikipedia.org/wiki/Variant_Call_Format
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Pierre Lindenbaum
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