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non-unique values when setting 'row.names' error in DESeq2

Hi Everyone!

I am trying to run the DESeqDataSetFromMatrix() command using a specific dataset but I keep getting the following error.

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For some reason, R (version 4.0.5) is trying to assign the first column of my DataFrame to be the row names, even though I have already assigned the row names to be the gene names.

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Also, here is a sampling of the data that I'm working with.

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I am currently working in R version 4.0.5. Any help or pointers in the right direction would be greatly appreciated :)

deseq2 r
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written by Sai Prasada • Sai Prasada

can you try without tidy=TRUE ?

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written by cpad0112 cpad0112

1 answer

Remove tidy=TRUE, because tidy option is "for matrix input: whether the first column of countData is the rownames for the count matrix"

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written by Basti • Basti

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