Removal of multiple samples from vcf file
I have a vcf file which has been filtered "vcftools --vcf file_filtered.vcf --maf 0.05 --max-missing 0.8 --min-meanDP 10 --recode --out snp_filtered_0.05.vcf.gz" this output file will be used to remove 13 samples from .vcf file.gz. Kindly help me to do. After wards I will do haploview.
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bcftools view --samples-file file
-S, --samples-file [^]<file> file of samples to include (or exclude with "^" prefix)
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Pierre Lindenbaum
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