How to show relabel sub cluster on the original cluster in Seurat
Hi all!
I have some data that I've been clustering using Seurat. I ended up with 30 clusters, but I subset 3 of these clusters are reclustered them in order to get more specific cell types. I now have 7 clusters in this subset, but want to relabel the cells in the original object with the 30 clusters. Is this possible? Would really appreciate some help!
1 answer
Generally you should be able to use SetIdent().
I wrote a concise tutorial on this here: https://github.com/satijalab/seurat/discussions/4137#discussioncomment-407760
Also look here for additional details on subclustering: https://github.com/satijalab/seurat/discussions/4122
Hope this helps!
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