In the output files of GISTThere is CNV genotype file that has processed gene mapping for CNV. So, I want to know how it do gene mapping. CNV is large and could include mutiple genes.
snpsift website shows how to annotate variants with dbsnp (one file). java -jar SnpSift.jar annotate dbSnp132.vcf variants.vcf > variants_annotated.vcf but if I want annotate using …
Users could conveniently download matrix data processed for direct downstream analysis from GTEx database. I want to know how to specifically download the NGS-based raw …
The TCGA CNV workflow uses Birdsuite to estimate raw copy number (CN). The affymetrix genotyping console (GTC) use similar algorithm developed by broad. Is GTC …
Hello. I have various .bed and .tped files (+ corresponding .fam/.tfam files) that I am exporting in vcf format from plink as follows: ./plink --tfile …