This is a test version of Biostars. For the public version, visit https://www.biostars.org.
miRDeep2.pl error in make_html2.pl

I have installed

cpan install PDF::API2

And still got error

Can't locate PDF/API2.pm in @INC (@INC contains: /home/nbri/Tikshana/Ath/small_RNA/mirDeep/mirdeep2/lib/perl5 /home/nbri/vaishali/TOMATO_SRNA/new_analysis/mirdeep2-master/lib/perl5 /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64 /perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /home/nbri/Tikshana/Ath/small_RNA/mirDeep/mirdeep2/bin/make_html2.pl line 25. BEGIN failed--compilation aborted at /home/nbri/Tikshana/Ath/small_RNA/mirDeep/mirdeep2/bin/make_html2.pl line 25

locate PDF/API2.pm

/home/nbri/.cpan/build/PDF-API2-2.041-0/blib/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-0/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-1/blib/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-1/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-2/blib/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-2/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-3/blib/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-3/lib/PDF/API2.pm
/home/nbri/anaconda3/lib/site_perl/5.26.2/PDF/API2.pm
/home/nbri/anaconda3/pkgs/perl-pdf-api2-2.035-pl526_0/lib/site_perl/5.26.2/PDF/API2.pm
/home/nbri/miniconda2/envs/metawrap-env/lib/site_perl/5.26.2/PDF/API2.pm
/home/nbri/miniconda2/pkgs/perl-pdf-api2-2.035-pl526_0/lib/site_perl/5.26.2/PDF/API2.pm

Kindly help me to resolve the issue

mirna mirdeep make_html2.pl
• 1,368 views • link
updated by Ram Ram • written by tikshyadav19 • tikshyadav19

Your post here is copy pasted from your response in this thread: Mirdeep2 Installation (Error In Make_Html.Pl) but is missing the overarching context, which is that you're running into an error installing mirdeep2. Please don't start a thread with half the context buried elsewhere. Reading your post should suffice for anyone to understand what you're trying to achieve, what you've tried doing so far and where you're running into difficulties.

• 0 views • link
written by Ram Ram

Yes, I did so as the thread I replied to is quite old didn't expect any response there what i tried I have already described above in my question. also tried export PERL5LIB=/home/nbri/anaconda3/lib/site_perl/5.26.2/PDF/API2.pm

• 0 views • link
written by tikshyadav19 • tikshyadav19

Please read my whole comment. I am trying to help you frame your question better, not answer your incomplete post. EDIT: And it looks like even your copy-paste is badly done. Please invest some more effort - this is your problem you're trying to solve and no one is going to invest as much effort as you.

• 0 views • link
written by Ram Ram

0 answers

No answers yet.

Log in to answer this question.

More posts like this
  • abricate perl module not found
    written by zhichusun • zhichusun
    abricate Can't locate Path/Tiny.pm in @INC (@INC contains: /root/miniconda3/envs/abricate/lib/site_perl/5.26.2/Path/Tiny.pm /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /root/miniconda3/envs/abricate/bin/abricate line 7. BEGIN failed--compilation aborted at /root/miniconda3/envs/abricate/bin/abricate …
  • The problems of make_html.pl when install the miRDeep2
    written by 51203903042 • 51203903042
    When I installed miRDeep2, the following error occurred in make_html.pl: Cannot find PDF/API2.pm in @INC (@INC contains: /usr/local/lib64/perl5/usr/local/share/perl5/usr/lib64/perl5/vendor_perl/usr/share/perl5/vendor_perl/ usr / lib64 / perl5 / usr …
  • The problems when i install the miRDeep2
    written by 51203903042 • 51203903042
    I am trying to install mirdeep2. I tested make_html.pl and error appeared as following: Can't locate PDF/API2.pm in @inc (@inc contains: /home/students/anaconda3/lib/site_perl/5.26.2/PDF/API2.pm /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl …
  • miRDeep2 installation 'make_html.pl'
    written by Barry Digby Barry Digby
    Hi guys, I have been following the installation steps for miRDeep2 outlined here: [https://github.com/rajewsky-lab/mirdeep2.][1] I am stuck on the final step of testing installation, testing …
  • CPAN perl module installed failed
    written by IrisChang • IrisChang
    Hi, I am trying to use Pfam, but everytime I got the same message below. Can't locate Moose.pm in @INC (@INC contains: /usr/lib64/qt-3.3/bin /home/program/apache-maven-3.3.9/bin /usr/local/bin …
  • Installation of Perl Modules
    written by Bioinfonext Bioinfonext
    How to install all perl modules in single command required to run circos on CentOS linux platform? **Installed perl version :** [root@psgl software]# perl -v …
  • Error running Trinity
    written by lakhujanivijay lakhujanivijay
    I am running Trinity with following commands: Trinity --seqType fq --JM 1G --SS_lib_type FR --left my_R1.fq --right my_R2.fq --output /out and I am encountering below …
  • Tool: why did I failed to install perl module
    written by liuhui • liuhui
    Dear all, I want to install a perl module on my ubuntu 12.04, but I failed to install it. Could anyone please tell to why …
  • Mirdeep2 Installation (Error In Make_Html.Pl)
    written by liran0921 • liran0921
    <p>Hi,</p> <p>I am trying to install mirdeep2. At the last step, I tested make_html.pl and error appeared as following:</p> <p>[liran@ip14-mp2 tools]$ make_html.pl Can't locate PDF/API2.pm …