Has anybody used RIP-MD tool for generation of RIN from MD trajectories?
I have been trying to use the RIP-MD tool for generating residue interaction networks from pdb file and MD trajectories. I have tried installing the VMD plugin and running the files through that for the same. But when I hit the run button on the plugin after all the parameters the VMD windows freezes and no output is generated whatsoever. How to generate graphs using this tool.
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