Calculating phi and psi angles for a pdb file
I am trying to calculate the phi and psi angles for a PDB file. I know ProDy has a code that helps guide through the process. BioPython has pre-built functions that do the same, but you have to consider glycine, proline, and residues before proline. Does anyone know if Prody considers that, or should I include those parameters? I basically want to parse through the PDB file and calculate the phi and psi angles residue by residue. I did get the BioPython code from another source, and my output is only one chain.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How can I linearize certain residues within an existing protein structure to create a dumbbell-shap…
written by Aman Vishwakarma •
-
Single amino acid in a .pdb file and torsion angles
written by Joshtron •
-
Parsing Pdb file using Biopython parser: How to get all atoms instead of duplicates?
written by movchinar •
-
Biopython to compute the distance between residues
written by lisa •
-
How to extract x-y-z coordinates from pdb file and compute the torsion angles in matlab
written by pandoras13fox •
-
Dihedral angle calculation
written by suryaram2394 •
-
PDB file modification using specific dihedral backbone angles phi and psi
written by epsilone •
-
Calculation Of Phi And Psi Of Backbone From Pdb Co-Ordinates
written by acrnaresh •
-
Get Indexes Of Atoms Involved In Dihedral Angles For A Specific Residue In A Pdb File
written by Flow
-
Error: Parsing Pdb File With Biopython
written by Mkl •
